- probeSNPffer: R package for identifying (i.e. sniffing, “SNPffing”) methylation microarray probes whose sequences contain a SNP, given a user-specified BED file of variants. The methylation signal reported at such probes may be unreliable.
- SPRUCE: Have you ever encountered a migration surface and wondered why some areas were barriers or corridors to gene flow? SPRUCE is a flexible machine learning approach for determining what spatial variables are most predictive of a migration surface, particularly those created by the MAPS software.
- SPRUCE Paper (preprint)
- Henn Lab GitHub