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graphic art design of an apricot tree branch and the word "apricot" in black underneath

About APRICOT

Power analysis R package for the discovery of causal variants in an admixed population and the corresponding ancestral origin populations.

APRICOT GitHub Repository

Frontiers in Genetics paper: Admixed Populations Improve Power for Variant Discovery and Portability in Genome-Wide Association Studies (May 2021)

graphic art design of a dachshund sniffing a methylated DNA helix with the word "probeSNPffer" in white text

About probeSNPffer

R package for identifying (i.e. sniffing, “SNPffing”) methylation microarray probes whose sequences contain a SNP, given a user-specified BED file of variants. The methylation signal reported at such probes may be unreliable.

probeSNPffer GitHub Repository

graphic art design of a tree branch with red fruit resembling a phylogenetic tree. the word "imputor" is underneath it in white, outlined in brown.

About IMPUTOR

Python package to impute missing and/or miscalled bases in sequencing or array data using human population phylogenetic trees.

IMPUTOR GitHub Repository

IMPUTOR: Phylogenetically Aware Software for Imputation of Errors in Next-Generation Sequencing

graphic art design of a spruce tree branch with the word "spruce" in black text

About SPRUCE

Have you ever encountered a migration surface and wondered why some areas were barriers or corridors to gene flow? SPRUCE is a flexible machine learning approach for determining what spatial variables are most predictive of a migration surface, particularly those created by the MAPS software.

SPRUCE GitHub Repository

Molecular Biology and Evolution paper: Predicting environmental and ecological drivers of human population structure (May 2023)

graphic art design of a ponderosa tree branch and the word "ponderosa" underneath in white and outlined in brown.

About PONDEROSA

Python package that infers complex human genetic relatedness classifications, especially well in endogamous populations.

PONDEROSA GitHub Repository

GitHub Repositories

Henn Lab GitHub